Documentation
Cytoscape User Manual
Comprehensive guide covering all features of the Cytoscape desktop application for biological network visualization and analysis.
2025-11-10Access
Bioinformatics Toolkit
Resources
Documentation, tutorials, downloads, and tools for biological network analysis and research.
Tutorials
Getting Started with Cytoscape.js
Step-by-step tutorial for integrating Cytoscape.js into your web application with interactive network visualizations.
2025-10-05Access
Downloads
Cytoscape 3.10 Release
Latest stable release of the Cytoscape desktop application with enhanced pathway analysis and new layout algorithms.
2025-09-20Access
Tools
StringApp Plugin
Import and visualize protein-protein interaction networks directly from the STRING database within Cytoscape.
2025-08-15Access
Publications
Network Analysis in Systems Biology
Peer-reviewed publication using Cytoscape for comprehensive multi-omics network analysis in cancer research.
2025-07-30Access
Tutorials
Advanced Layout Algorithms Guide
Deep-dive tutorial on force-directed, hierarchical, and circular layout options for complex biological networks.
2025-06-12Access
Documentation
Cytoscape REST API Reference
Full API documentation for programmatic control of Cytoscape from external scripts and applications.
2025-05-22Access
Tools
Cytoscape App Store
Browse and install over 300 community-built apps for enrichment analysis, network alignment, and data import.
2025-04-18Access
Downloads
Cytoscape.js npm Package
Download the latest Cytoscape.js library for embedding interactive network graphs in your web projects.
2025-03-11Access
Quick Links
Jump directly to the most commonly accessed resources